Attributions

Glybrary is made possible due to the assistance from various sources. On this page we acknowledge the help received.

Funding

Glybrary is supported by NIH grants R24GM137763 and U01GM125267.

Data

Obtain cell line information.

Citation: Bairoch A. The Cellosaurus, a cell line knowledge resource. J. Biomol. Tech. 29:25-38(2018). DOI: 10.7171/jbt.18-2902-002; PMID: 29805321; PMCID: PMC5945021

Retrieve GlyTouCan accession numbers.

Citation: Yamada, I., Shiota, M., Shinmachi, D., Ono, T., Tsuchiya, S., Hosoda, M., Fujita, A., Aoki, N. P., Watanabe, Y., Fujita, N., Angata, K., Kaji, H., Narimatsu, H., Okuda, S., & Aoki-Kinoshita, K. F. (2020). The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences. Nature Methods, 17(7), 649–650. https://doi.org/10.1038/s41592-020-0879-8

Glycan and glycoprotein information.

Citation: GlyGen: Computational and Informatics Resources for Glycoscience. William S. York, Raja Mazumder, Rene Ranzinger, Nathan Edwards, Robel Kahsay, Kiyoko F. Aoki-Kinoshita, Matthew P. Campbell, Richard D. Cummings, Ten Feizi, Maria Martin, Darren A. Natale, Nicolle H. Packer, Robert J. Woods, Gaurav Agarwal, Sena Arpinar, Sanath Bhat, Judith Blake, Leyla Jael Garcia Castro, Brian Fochtman, Jeffrey Gildersleeve, Radoslav Goldman, Xavier Holmes, Vinamra Jain, Sujeet Kulkarni, Rupali Mahadik, Akul Mehta, Reza Mousavi, Sandeep Nakarakommula, Rahi Navelkar, Nagarajan Pattabiraman, Michael J. Pierce, Karen Ross, Preethi Vasudev, Jeet Vora, Tatiana Williamson, and Wenjin Zhang. Glycobiology. 2019. PMID: 31616925.

Link To GlyTouCan accession numbers.

Citation: Fujita, A., Aoki, N. P., Shinmachi, D., Matsubara, M., Tsuchiya, S., Shiota, M., Ono, T., Yamada, I., & Aoki-Kinoshita, K. F. (2021). The international glycan repository GlyTouCan version 3.0. Nucleic Acids Res. 49(D1), D1529-D1533. doi: 10.1093/nar/gkaa947

Phenotype ontologies.

Citation: Sebastian Köhler, Michael Gargano, Nicolas Matentzoglu, Leigh C Carmody, David Lewis-Smith, Nicole A Vasilevsky, Daniel Danis, Ganna Balagura, Gareth Baynam, Amy M Brower, Tiffany J Callahan, Christopher G Chute, Johanna L Est, Peter D Galer, Shiva Ganesan, Matthias Griese, Matthias Haimel, Julia Pazmandi, Marc Hanauer, Nomi L Harris, Michael J Hartnett, Maximilian Hastreiter, Fabian Hauck, Yongqun He, Tim Jeske, Hugh Kearney, Gerhard Kindle, Christoph Klein, Katrin Knoflach, Roland Krause, David Lagorce, Julie A McMurry, Jillian A Miller, Monica C Munoz-Torres, Rebecca L Peters, Christina K Rapp, Ana M Rath, Shahmir A Rind, Avi Z Rosenberg, Michael M Segal, Markus G Seidel, Damian Smedley, Tomer Talmy, Yarlalu Thomas, Samuel A Wiafe, Julie Xian, Zafer Yüksel, Ingo Helbig, Christopher J Mungall, Melissa A Haendel, Peter N Robinson, The Human Phenotype Ontology in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D1207–D1217, https://doi.org/10.1093/nar/gkaa1043

Disease ontologies.

Citation: Mondo: Unifying diseases for the world, by the world, Nicole A Vasilevsky, Nicolas A Matentzoglu, Sabrina Toro, Joseph E Flack IV, Harshad Hegde, Deepak R Unni, Gioconda F Alyea, Joanna S Amberger, Larry Babb, James P Balhoff, Taylor I Bingaman, Gully A Burns, Orion J Buske, Tiffany J Callahan, Leigh C Carmody, Paula Carrio Cordo, Lauren E Chan, George S Chang, Sean L Christiaens, Louise C Daugherty, Michel Dumontier, Laura E Failla, May J Flowers, H. Alpha Garrett Jr., Jennifer L Goldstein, Dylan Gration, Tudor Groza, Marc Hanauer, Nomi L Harris, Jason A Hilton, Daniel S Himmelstein, Charles Tapley Hoyt, Megan S Kane, Sebastian Köhler, David Lagorce, Abbe Lai, Martin Larralde, Antonia Lock, Irene López Santiago, Donna R Maglott, Adriana J Malheiro, Birgit H M Meldal, Monica C Munoz-Torres, Tristan H Nelson, Frank W Nicholas, David Ochoa, Daniel P Olson, Tudor I Oprea, David Osumi-Sutherland, Helen Parkinson, Zoë May Pendlington, Ana Rath, Heidi L Rehm, Lyubov Remennik, Erin R Riggs, Paola Roncaglia, Justyne E Ross, Marion F Shadbolt, Kent A Shefchek, Morgan N Similuk, Nicholas Sioutos, Damian Smedley, Rachel Sparks, Ray Stefancsik, Ralf Stephan, Andrea L Storm, Doron Stupp, Gregory S Stupp, Jagadish Chandrabose Sundaramurthi, Imke Tammen, Darin Tay, Courtney L Thaxton, Eloise Valasek, Jordi Valls-Margarit, Alex H Wagner, Danielle Welter, Patricia L Whetzel, Lori L Whiteman, Valerie Wood, Colleen H Xu, Andreas Zankl, Xingmin Aaron Zhang, Christopher G Chute, Peter N Robinson, Christopher J Mungall, Ada Hamosh, Melissa A Haendel, medRxiv 2022.04.13.22273750; doi: https://doi.org/10.1101/2022.04.13.22273750

Obtain species, subcellular localization, tissues. Retrieve protein information.

Citation: The UniProt Consortium UniProt: the universal protein knowledgebase in 2021 Nucleic Acids Res. 49:D1 (2021)

Initially obtained list of biospecimen types, which was further built upon.

Citation: Biospecimens (Biospecimen classification)

Obtain countries list

Citation: https://worldpopulationreview.com/countries

Code

Draw glycans and help retrieve GlyTouCan accession numbers.

Citation: Akul Y Mehta, Richard D Cummings, GlycoGlyph: a glycan visualizing, drawing and naming application, Bioinformatics, Volume 36, Issue 11, June 2020, Pages 3613–3614, https://doi.org/10.1093/bioinformatics/btaa190

Draw chemical structures

Citation: The work of Kekule.js has been publish on Journal of Chemical Information and Modeling. To support our work, please cite: J. Chem. Inf. Model. 2016, 56(6), 1132−1138 and J. Chem. Inf. Model. 2016, 57(10), 2407−2412.